Change VM app deployer to run CT install scripts during image customization (virt-customize --run) instead of via a first-boot systemd service. Updated docs to reflect live installation, new update workflow (curl the ct/<app>.sh inside the VM), and new troubleshooting/reinstall guidance. misc/vm-app.func now injects function libs, runs a temporary wrapper inside virt-customize (with logging and error handling), removes the first-boot service and update wrapper injection, and updates summary/status messages to mark apps as pre-installed.
Introduced new and updated documentation files across the docs/ directory, including project structure guides, function library references, and standardized READMEs for ct, install, vm, tools, api, and misc. This update fully documents all nine function libraries, provides quick start and learning paths, and mirrors the project structure for easier navigation and contribution.